| Data | Description | Source | Organisation | Resource Link | Status | Frequency of Update | Level of Guarantee | Usage Restrictions |
|---|
| BLAST | BLAST Web Portal | | NUS-BIC | Link | Operational | NA | NA | NUS |
| BLAST+ | BLAST+ Web Portal | | NUS-BIC | Link | Operational | NA | NA | None |
| ClustalW | ClustalW Web Portal | | NUS-BIC | Link | Operational | NA | NA | None |
| CysView | A tool facilitating the grouping of entries in a database (Swissprot or GenBank format-based) by similar disulfide bridge patterns, 'disulfide connectivity patterns' | | I2R | Link | Operational | NA | NA | None |
| DNAFSMiner | DNA sequences are an important type of biomedical data that contains many biologically meaningful functional sites such as transcription start site, coding region, translation initiation site, splice site, polyadenylation signal and so on. Our DNA functional site miner (DNAFSMiner) is a web-based software toolbox that aims to predict these functional sites in DNA sequences. There are two software tools. One is called TIS Miner which can be used to predict translation initiation site (TIS) in vertebrate mRNA, cDNA, or DNA sequences. The other is called Poly(A) Signal Miner which can be used to predict polyadenylation (poly(A)) signal in human DNA sequences. | | I2R | Link | Operational | NA | NA | None |
| Dragon Metabolome Explorer | System for exploring potential associations in the metabolic networks (pathways, enzymes and metabolites), ontologies (anatomy, developmental stages) and genes in Arabidopsis thaliana and other plants, based on mining PubMed documents | | I2R-NUS-DBS | Link | Operational | NA | NA | None |
| JEMBOSS | Java Emboss Portal | | NUS-BIC | Link | Operational | NA | NA | NUS |
| MGAlign | MGAlign (short for mRNA to Genome Alignments) is a webservice to quickly and accurately align mRNA sequences to genomic sequences on a personal computer | | NUS-BIC | Link | Operational | NA | NA | None |
| MoViES | Molecular vibrations evaluation server | | NUS-CSC | Link | Operational | NA | NA | None |
| NetCTL | NetCTL predicts CTL epitopes in protein sequences. The current version expands the MHC class I binding predicition to 12 MHC supertypes including the supertypes A26 and B39. The accuracy of the MHC class I peptide binding affinity is significantly improved compared to the earlier version. Also the prediction of proteasonal cleavage has been improved and the updated version has been trained on a set of 886 known MHC class I ligands. | Center for Biological Sequence Analysis, Technical University of Denmark | NUS-BIC | Link | Operational | NA | NA | None |
| S* Life Science Informatics Course Interface | S* Life Science Informatics Official Website | | S* Alliance | Link | Operational | NA | NA | None |
| SCOP | Structural Classification of Proteins Mirror | SCOP UK | NUS-BIC | Link | Operational | NA | NA | None |
| SDPMOD | A web service for comparative modelling of small disulphide-bonded proteins | | NUS-BIC | Link | Operational | NA | NA | None |
| Sequence Manipulation Suite (SMS) | The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. | University of Alberta | NUS-BIC | Link | Operational | NA | NA | None |
| SGM | Splicing Graph Modules (SGM) is a collection of Python modules housed within a Python package to draw splicing graphs (a form of visual representation of several transcript sequences which may exhibit alternative splicing). A web service is available for users to generate splicing graphs using a web browser. | | NUS-BIC | Link | Operational | NA | NA | None |
| SVMProt | Protein function prediction software | | NUS-CSC | Link | Operational | NA | NA | None |
| UD BLAST (GRID Based) | The Univa UD BLAST is a web based portal which submits BLAST jobs through the Terra-Campus GRID infrastructure. | | NUS-BIC | Link | Operational | NA | NA | NUS |
| UD HMMER (GRID Based) | The Univa UD HMMER is a web based portal which submits HMMER jobs through the Terra-Campus GRID infrastructure. | | NUS-BIC | Link | Operational | NA | NA | NUS |
| WebQTL | GeneNetwork consists of linked resources and analysis tools for systems genetics. It has been designed for the analysis of networks of genes, transcripts, and classic phenotype data sets. GeneNetwork combines more than 25 years of legacy data generated by hundreds of scientists with genome sequence data and massive transcriptome data sets (expression genetic or eQTL data sets). WebQTL a major module of GeneNetwork that is optimized for fast on-line quantitative trait locus (QTL) analysis of traits that are controlled by combinations of gene variants and environmental factors. WebQTL exploits reference populations of humans (CEPH), mice (BXD, AXB, LXS, etc.), rats (HXB), Drosophila, barley, and Arabidopsis. Each of these genetic reference populations is accompanied by dense genetic maps used to locate modifier genes that cause downstream differences in expression and phenotypes, including disease susceptibility. | GeneNetwork University of Tennessee | NUS-BIC | Link | Operational | NA | NA | None |
| WEMBOSS | Emboss Web Portal | | NUS-BIC | Link | Operational | NA | NA | None |
| XdomView (Version 2.1) | A Graphical Tool for Protein Domain and Exon Position Visualization | | NUS-BIC | Link | Under Maintenance | NA | NA | None |